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Exploring Endogenous Signals in Mouse Brain Imaging

Autofluorescence imaging (AFI) is another, perhaps less commonly known, technique used to measure neuronal activity. It relies on the detection of changes in fluorescence from endogenous mitochondrial proteins inside neurons, named flavoproteins. During aerobic energy metabolism, these flavoproteins are oxidized which is translated by an increase in the molecule’s autofluorescence. Therefore, this signal can be used to measure neuronal activity given that an increase in neuronal responses is directly linked to an increase in its metabolic rate. In this blog, we explore the mouse primary somatosensory cortex function using both intrinsic and autofluorescence imaging techniques.

Read More »

From Scents to Signals: exploring the mouse olfactory bulb

When we think about how we use our senses to interact with the surrounding environment, the sense of smell might not be the first to come to mind. However, evidence indicates that olfaction plays a crucial role in our species, influencing several aspects of our social interactions, such as mate choice and mother-infant bonding (Boesveldt and Parma 2021).
One study estimated that humans can discriminate more than a trillion different odors (Bushdid et al. 2014). This remarkable capability is due to the presence of a large number of olfactory sensory neurons in the back of our nasal cavity. Each neuron expresses a single type of olfactory receptor protein, which has a distinct affinity for specific odorant molecules.

Read More »

Cortical Dynamics in Mouse Behavior using Widefield Calcium Imaging – Part One

The mouse cortex is a complex structure segmented into distinct regions, each specialized in processing sensory information, motor planning, execution etc. These functional modules are highly interconnected and work together to allow the animal to interact with its environment and drive behavior. Different behavioral contexts can significantly influence how these cortical regions process information and interact with each other. For instance, during locomotion, areas linked to motor control are activated to fine-tune limb positions due to obstacles in the environment, while sensory areas such as the visual cortex prioritize processing features that are more salient during locomotion (Schneider 2020). Understanding the dynamic interplay between cortical areas and behavior is crucial to comprehending how the brain processes sensory information and drives behavior.

Read More »
Mapping of visual areas in mice

Retinotopic mapping

The visual system of mammals is organized in a way that each section of the visual field is processed by a corresponding region of the brain. This is known as a visuotopic or retinotopic (referring to the retina) organization of the visual system. The retinotopic mapping of visual cortex was previously described in several mammalian species – including primates, carnivores and rodents -using different anatomical or functional approaches. Each approach comes with advantages and drawbacks.

Read More »
Adjusting the focus depth to enhance image quality of Red channel

Can we adjust focus to enhance optical imaging signals?

Optical imaging of intrinsic signals (OIS) has been around for almost 40 years now and it is part of the basic portfolio of technologies available to neuroscientists today. This versatile technique measures small changes in light absorption that occur in the brain tissue in order to assess its function. The signals measured in OIS are primarily related to changes in blood volume and oxygenation of the brain tissue.

Read More »

Unlocking the Power of Optical Imaging: Advantages, Types and Role of AI

Step into the intriguing realm of optical imaging. With our increasing understanding of the human body’s complexity, the search is always on for safer, efficient, and in-depth exploration methods. Optical imaging, by its exceptional non-ionizing nature, rich variety, and its incorporation with artificial intelligence, is emerging as a crucial tool in the healthcare industry.

Read More »

Understanding Medical Optical Imaging: Technologies, Types and Applications

Medical optical imaging is an investigative imaging technique used for medical applications that involves the use of light. First pioneered by American Physical Chemist Britton Chance, it has evolved to incorporate methods like optical microscopy, spectroscopy, endoscopy, scanning laser ophthalmoscopy, laser Doppler imaging, and optical coherence tomography. Thus, when faced with the question, ‘what is an optical imaging system?’, it can be defined as an advanced imaging technique that uses different forms of light to scan, visualise and analyse various parts of the human body. It offers a non-invasive approach to diagnose, treat and monitor numerous disease conditions.

Read More »

Redefining the Scope of Fluorescence Imaging in Neuroscience with Shadow Imaging

Fluorescence microscopy is a key instrument in the field of neuroscience due to its capabilities in multicolor and structural imaging, coupled with advanced labeling strategies. However, certain restrictions and inconsistencies are inherent in such targeted fluorophore labelling. Enter the novel solution – shadow imaging techniques. A new approach that promises to reduce these limitations and push forward the boundaries of neuroscience research.

Read More »

The Vital Role of Mice in Biomedical Research

Mice serve as crucial contributors to numerous aspects of biomedical research, driving forward scientific understanding and enabling medical advancements related to a broad spectrum of diseases including cancer, genetic disorders, cardiovascular diseases, and infectious diseases. Owing to their exceptional genetic similarity to humans, straightforward breeding processes, and brief lifespans, mice can be effectively used to study disease progression. The indispensable role of mice became particularly evident during the research and development process for Covid-19 vaccines. Additionally, mice contribute considerably to research in the fields of infectious diseases, cancer, Alzheimer’s disease, dementia, aging and drug development.

Read More »

Visualizing the Brain in Mice: Advanced and Emerging Techniques

This extended article delves into the sophisticated and emerging techniques of visualizing the brain in mice, emphasizing on not disrupting normal brain functions. It takes a deeper look into the tactics such as two-photon microscopy, fluorescence lifetime imaging and microscopy (FLIM), Voltron Imaging, and applications of Optogenetics. Another significant element of the method involves living brain slices swiftly obtained post-sacrifice from mice and rats.

Read More »

Illuminating the Brain’s Mysteries: Discovering the Advances in Optical Methods in Neuroscience

Neuroscience, the scientific study of the nervous system, heavily relies on exploring the brain – the most complex organ, to understand the intricate aspects that define our being. Optical methods have significantly revolutionized the study of the brain by coupling numerous investigative methods in a single experiment. These methods facilitate cell activity monitoring, manipulation, circuit reconstruction, and cell characterization. So, ‘What is optical imaging in neuroscience, and what advances has it made?’ Let’s delve deeper into the topic.

Read More »

The Future of Optical Imaging in Neuroscience

Optical imaging, a crucial technology in neuroscience, can offer in depth insights into the brain’s structure and function. Recognized as one of the pioneering approaches in neuroscience, it facilitates visualizing and manipulating neural activities, which in turn can greatly revolutionize our understanding of the nervous system. Its wide-ranging potential is gradually being unfolded through continuous advancements.

Read More »

Unraveling the Secrets of the Brain: How are Mice used in Neuroscience?

Have you ever wondered ‘How are mice used in neuroscience?’ Mice serve as an invaluable tool in neuroscience research due to their remarkable genetic similarity to humans, their short, efficient reproductive cycles, and the ease with which they can be genetically manipulated. By studying mice, researchers gain significant insights into the understanding of the functioning and diseases of the human brain and nervous system.

Read More »

Exploring Endogenous Signals in Mouse Brain Imaging

Autofluorescence imaging (AFI) is another, perhaps less commonly known, technique used to measure neuronal activity. It relies on the detection of changes in fluorescence from endogenous mitochondrial proteins inside neurons, named flavoproteins. During aerobic energy metabolism, these flavoproteins are oxidized which is translated by an increase in the molecule’s autofluorescence. Therefore, this signal can be used to measure neuronal activity given that an increase in neuronal responses is directly linked to an increase in its metabolic rate. In this blog, we explore the mouse primary somatosensory cortex function using both intrinsic and autofluorescence imaging techniques.

Read More »

From Scents to Signals: exploring the mouse olfactory bulb

When we think about how we use our senses to interact with the surrounding environment, the sense of smell might not be the first to come to mind. However, evidence indicates that olfaction plays a crucial role in our species, influencing several aspects of our social interactions, such as mate choice and mother-infant bonding (Boesveldt and Parma 2021).
One study estimated that humans can discriminate more than a trillion different odors (Bushdid et al. 2014). This remarkable capability is due to the presence of a large number of olfactory sensory neurons in the back of our nasal cavity. Each neuron expresses a single type of olfactory receptor protein, which has a distinct affinity for specific odorant molecules.

Read More »

Cortical Dynamics in Mouse Behavior using Widefield Calcium Imaging – Part One

The mouse cortex is a complex structure segmented into distinct regions, each specialized in processing sensory information, motor planning, execution etc. These functional modules are highly interconnected and work together to allow the animal to interact with its environment and drive behavior. Different behavioral contexts can significantly influence how these cortical regions process information and interact with each other. For instance, during locomotion, areas linked to motor control are activated to fine-tune limb positions due to obstacles in the environment, while sensory areas such as the visual cortex prioritize processing features that are more salient during locomotion (Schneider 2020). Understanding the dynamic interplay between cortical areas and behavior is crucial to comprehending how the brain processes sensory information and drives behavior.

Read More »
Mapping of visual areas in mice

Retinotopic mapping

The visual system of mammals is organized in a way that each section of the visual field is processed by a corresponding region of the brain. This is known as a visuotopic or retinotopic (referring to the retina) organization of the visual system. The retinotopic mapping of visual cortex was previously described in several mammalian species – including primates, carnivores and rodents -using different anatomical or functional approaches. Each approach comes with advantages and drawbacks.

Read More »
Adjusting the focus depth to enhance image quality of Red channel

Can we adjust focus to enhance optical imaging signals?

Optical imaging of intrinsic signals (OIS) has been around for almost 40 years now and it is part of the basic portfolio of technologies available to neuroscientists today. This versatile technique measures small changes in light absorption that occur in the brain tissue in order to assess its function. The signals measured in OIS are primarily related to changes in blood volume and oxygenation of the brain tissue.

Read More »

Unlocking the Power of Optical Imaging: Advantages, Types and Role of AI

Step into the intriguing realm of optical imaging. With our increasing understanding of the human body’s complexity, the search is always on for safer, efficient, and in-depth exploration methods. Optical imaging, by its exceptional non-ionizing nature, rich variety, and its incorporation with artificial intelligence, is emerging as a crucial tool in the healthcare industry.

Read More »

Understanding Medical Optical Imaging: Technologies, Types and Applications

Medical optical imaging is an investigative imaging technique used for medical applications that involves the use of light. First pioneered by American Physical Chemist Britton Chance, it has evolved to incorporate methods like optical microscopy, spectroscopy, endoscopy, scanning laser ophthalmoscopy, laser Doppler imaging, and optical coherence tomography. Thus, when faced with the question, ‘what is an optical imaging system?’, it can be defined as an advanced imaging technique that uses different forms of light to scan, visualise and analyse various parts of the human body. It offers a non-invasive approach to diagnose, treat and monitor numerous disease conditions.

Read More »

Redefining the Scope of Fluorescence Imaging in Neuroscience with Shadow Imaging

Fluorescence microscopy is a key instrument in the field of neuroscience due to its capabilities in multicolor and structural imaging, coupled with advanced labeling strategies. However, certain restrictions and inconsistencies are inherent in such targeted fluorophore labelling. Enter the novel solution – shadow imaging techniques. A new approach that promises to reduce these limitations and push forward the boundaries of neuroscience research.

Read More »

The Vital Role of Mice in Biomedical Research

Mice serve as crucial contributors to numerous aspects of biomedical research, driving forward scientific understanding and enabling medical advancements related to a broad spectrum of diseases including cancer, genetic disorders, cardiovascular diseases, and infectious diseases. Owing to their exceptional genetic similarity to humans, straightforward breeding processes, and brief lifespans, mice can be effectively used to study disease progression. The indispensable role of mice became particularly evident during the research and development process for Covid-19 vaccines. Additionally, mice contribute considerably to research in the fields of infectious diseases, cancer, Alzheimer’s disease, dementia, aging and drug development.

Read More »

Visualizing the Brain in Mice: Advanced and Emerging Techniques

This extended article delves into the sophisticated and emerging techniques of visualizing the brain in mice, emphasizing on not disrupting normal brain functions. It takes a deeper look into the tactics such as two-photon microscopy, fluorescence lifetime imaging and microscopy (FLIM), Voltron Imaging, and applications of Optogenetics. Another significant element of the method involves living brain slices swiftly obtained post-sacrifice from mice and rats.

Read More »

Illuminating the Brain’s Mysteries: Discovering the Advances in Optical Methods in Neuroscience

Neuroscience, the scientific study of the nervous system, heavily relies on exploring the brain – the most complex organ, to understand the intricate aspects that define our being. Optical methods have significantly revolutionized the study of the brain by coupling numerous investigative methods in a single experiment. These methods facilitate cell activity monitoring, manipulation, circuit reconstruction, and cell characterization. So, ‘What is optical imaging in neuroscience, and what advances has it made?’ Let’s delve deeper into the topic.

Read More »

The Future of Optical Imaging in Neuroscience

Optical imaging, a crucial technology in neuroscience, can offer in depth insights into the brain’s structure and function. Recognized as one of the pioneering approaches in neuroscience, it facilitates visualizing and manipulating neural activities, which in turn can greatly revolutionize our understanding of the nervous system. Its wide-ranging potential is gradually being unfolded through continuous advancements.

Read More »

Unraveling the Secrets of the Brain: How are Mice used in Neuroscience?

Have you ever wondered ‘How are mice used in neuroscience?’ Mice serve as an invaluable tool in neuroscience research due to their remarkable genetic similarity to humans, their short, efficient reproductive cycles, and the ease with which they can be genetically manipulated. By studying mice, researchers gain significant insights into the understanding of the functioning and diseases of the human brain and nervous system.

Read More »